Journal Club - (almost) every other week we read and discuss relevant research articles.
Population Genetic notes from our 2019 summer lab meetings can found here!
4 July 2019 Wang et al. (2019) Genetic basis of ruminant headgear and rapid antler regeneration. Science 364: 1153
20 June 2019 Fages et al. (2019) Tracking five millennia of horse management with extensive ancient genome time series. Cell 177: 1419–1435
6 June 2019 Faria et al. 2018. Evolving inversions. Trends in Ecology & Evolution 34:239-248
23 May 2019 Knief et al. 2019. Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone. Nature Ecology & Evolution doi: 10.1038/s41559-019-0847-9
9 May 2019 Barrett et al. 2019. Linking mutation to survival in wild mice. Science 363:499–504
28 March 2019 Schrider DR, Kern AD. 2018. Supervised machine learning for population genetics: a new paradigm. Trends in Genetics 34:301–312
14 March 2019 Santure AW, Garant D. 2018. Wild GWAS: association mapping in natural populations. Molecular Ecology Resources 8:729–738
28 February 2019 Fugère V, Hendry AP. 2018. Human influences on the strength of selection. Proceedings of the National Academy of Sciences 115: 10070–10075
31 January 2019 Queseda et al. 2018. Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology & Evolution 3: 87–95
17 January 2019 Siewart KM, Voight BF. 2017. Detecting long-term balancing selection using allele frequency correlation. Molecular Biology & Evolution 34: 2996–3005
30 November 2018 Eyre-Walker A, Keightley PD. 2007. The distribution of fitness effects of new mutations. Nature Reviews Genetics 8: 610–618
17 November 2018 Foote et al. 2016. Genome-culture coevolution promotes rapid divergence of killer whale ecotypes. Nature Communications 7:11693
3 November 2018 Bilinski P, Albert PS, Berg JJ, Birchler JA, Grote MN, Lorant A, Quezada J, Swarts K, Yang J, Ross-Ibarra J. 2018. Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays. PLoS Genetics 14:e1007162
19 October 2018 Godet L, Devictor V. In press. What conservation does. Trends Ecology & Evolution doi: 10.1016/j.tree.2018.07.004
5 October 2018 Meyer et al. 2018 Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals. Science 361:591-594
21 September 2018 Jesmer et al. 2018. Is ungulate migration culturally transmitted? Evidence of social learning from translocated animals. Science 361: 1023–1025
17 August 2018 Skovmand LH, Xu CXY, Servedio MR, Nosil P, Barrett RDH, Hendry AP. 2018. Keystone genes. Trends in Ecology & Evolution doi: 10.1016/j.tree.2018.07.002
3 August 2018 Zepeda Mendoza et al. 2018. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nature Ecology & Evolution 2:659-668.
27 July 2018 Yoder AD, Poelstra JW, Tiley GP, Williams RC. 2018. Neutral theory is the foundation of conservation genetics. Molecular Biology and Evolution doi:10.1093/molbev/msy076
13 July 2018 Daly KG, et al. 2018. Ancient goat genomes reveal mosaic domestication in the Fertile Crescent. Science 361: 85–88
6 July 2018 Hendricks S, Anderson EC, Antao T, Bernatchez L, Forester BR, Garner B, Hand BK, Hohenlohe PA, Kardos M, Koop B, Sethuraman A, Waples RS, Luikart G. 2018. Recent advances in conservation and population genomics data analysis. Evolutionary Applications doi:10.1111/eva.12659
15 June 2018 Tunstall T, Kock R, Vahala J, Diekhans M, Fiddes I, Armstrong J, Paten B, Ryder OA, Steiner CC. 2018. Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells. Genome Research doi:10.1101/gr.227603.117
01 June 2018 Laine VN, Gossmann TI, Schachtschneider KM, Garroway CJ, Madsen O, Verhoeven KJ, Jager V, Megens H-J, Warren W-C, Minx P, Crooijmans RPMA, Corcoran P, The Great Tit HapMap Consortiumw, Sheldon BC, Slate J, Zeng K, Oers K, Visser ME, Groenen MM. 2016. Evolutionary signals of selection on cognition from the great tit genome and methylome. Nature Communications 7:10474
25 May 2018 Bay RA, Harrigan RJ, Underwood VL, Gibbs HL, Smith TB, Ruegg K. 2018. Genomic signals of selection predict climate-driven population declines in a migratory bird. Science 359:83-86.
18 May 2018 Prince DJ, O'Rourke SM, Thompson TQ, Ali OA, Lyman HS, Saglam IK, Hotaling TJ, Spidle AP, Miller MR. 2017. The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation. Science Advances 3: e1603198.
11 May 2018 Micheletti SJ, Narum SR. 2018. Utility of pooled sequencing for association mapping in nonmodel organisms. Molecular Ecology Resources doi: 10.1111/1755-0998
26 June 2017 De Barba M, Miquel C, Lobreaux S, Quenette PY, Swenson JE, Taberlet P. 2017. High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA. Molecular Ecology Resources 17, 492–507.
05 June 2017 Tigano A, Shultz AJ, Edwards SV, Robertson GJ, Friesen VL. 2017. Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird. Ecology & Evolution 7: 2370-2381.
29 May 2017 Ziegler M, Seneca FO, Yum LK, Palumbi SR, Voolstra CR. 2017. Bacterial community dynamics are linked to patterns of coral heat tolerance. Nature Communications 8: 14213.
15 May 2017 Epstein B, Jones M, Hamede R, Hendricks S, McCallum H, Murchison EP, Schonfeld B, Wiench C, Hohenlohe P, Storfer A. 2016. Rapid evolutionary reponse to transmissible cancer in Tasmanian devils. Nature Communications 7: 12684.
11 April 2017 Hoban S, Kelley JL, Lotterhos KE, Antolin MF, Bradburd G, Lowry DB, Poss ML, Reed LK, Storfer A, Whitlock MC. 2016. Finding the genomic basis of local adaptation in non-model organisms: pitfalls, practical solutions, and future directions. The American Naturalist. 188: 379-397.